STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_0981PFAM: peptidase S16 lon domain protein; KEGG: gsu:GSU2433 ATP-dependent protease, putative. (831 aa)    
Predicted Functional Partners:
Taci_0980
DNA-(apurinic or apyrimidinic site) lyase; KEGG: similar to endonuclease III; K10773 endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop.
       0.825
Taci_0982
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcr:BCAH187_A5356 cold shock protein CspC.
       0.493
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.