STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1053PFAM: type II secretion system protein; KEGG: bba:Bd1511 PilC; type II secretion system protein. (401 aa)    
Predicted Functional Partners:
Taci_1055
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB.
 
 0.997
Taci_1052
Hypothetical protein; KEGG: shn:Shewana3_0154 general secretion pathway protein G.
 
  
 0.942
Taci_1054
KEGG: gsu:GSU1492 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.939
Taci_1047
KEGG: ade:Adeh_0641 type IV pilus assembly protein PilM.
 
 
 
 0.926
Taci_1561
PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: mfa:Mfla_2225 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
 
  
 0.917
Taci_1046
PFAM: Fimbrial assembly family protein; KEGG: gsu:GSU2031 type IV pilus biogenesis protein PilN.
   
 
 0.904
Taci_1051
Hypothetical protein; KEGG: pap:PSPA7_2034 general secretion pathway protein I.
  
  
 0.898
Taci_1043
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: sfu:Sfum_0540 type IV pilus secretin PilQ; Belongs to the bacterial secretin family.
 
  
 0.890
Taci_0609
Hypothetical protein.
  
  
 0.749
Taci_1495
PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein.
  
  
 0.749
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.