STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1127PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: aeh:Mlg_2063 AIR synthase-like protein. (326 aa)    
Predicted Functional Partners:
queH
Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.825
Taci_1126
PFAM: peptidase M24; creatinase; KEGG: bcy:Bcer98_2892 peptidase M24; Belongs to the peptidase M24B family.
       0.822
Taci_1130
PFAM: Transketolase central region; Transketolase domain protein; KEGG: sfu:Sfum_1302 transketolase.
       0.819
Taci_1129
tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
       0.810
Taci_1125
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gur:Gura_0869 rubredoxin-type Fe(Cys)4 protein.
     
 0.691
Taci_1436
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_6996 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
 
   
 0.628
Taci_0671
KEGG: gme:Gmet_0463 flagellar protein FlaG protein.
    
   0.501
Taci_1336
TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bha:BH2457 flagellar motor switch protein G.
    
   0.501
Taci_1255
PFAM: protein of unknown function DUF1393; KEGG: inner-membrane translocator precursor; K01998 branched-chain amino acid transport system permease protein.
 
    0.499
Taci_1131
TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: sfu:Sfum_3106 alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.497
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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