STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1140KEGG: ppr:PBPRB1542 GrdX protein; Contains selenocysteine. (122 aa)    
Predicted Functional Partners:
Taci_1138
PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; KEGG: dds:Ddes_0112 sarcosine reductase.
 
   
 0.908
Taci_1137
PFAM: glycine reductase complex selenoprotein A; KEGG: dds:Ddes_0118 glycine reductase; Contains selenocysteine.
 
   
 0.880
Taci_1136
Contains selenocysteine; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; glycine reductase, selenoprotein B; PFAM: Selenoprotein B glycine/betaine/sarcosine/D- proline reductase; KEGG: dds:Ddes_0113 selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
 
   
 0.873
Taci_1134
PFAM: fatty acid synthesis plsX protein; KEGG: dds:Ddes_0116 glycine reductase.
 
   
 0.836
Taci_1135
KEGG: dds:Ddes_0115 betaine reductase.
 
   
 0.834
Taci_1139
PFAM: Thioredoxin domain; KEGG: dds:Ddes_0117 thioredoxin domain protein; Belongs to the thioredoxin family.
 
     0.753
Taci_0389
KEGG: sfu:Sfum_3949 hypothetical protein.
  
     0.591
Taci_0681
KEGG: gme:Gmet_2873 hypothetical protein.
  
     0.484
Taci_1141
TIGRFAM: L-lysine 6-transaminase; PFAM: aminotransferase class-III; KEGG: pca:Pcar_2442 L-lysine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.402
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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