STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Taci_1268KEGG: azo:azo0598 SAM dependent methyl transferase. (394 aa)    
Predicted Functional Partners:
Taci_1267
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bcm:Bcenmc03_5521 HAD family hydrolase.
  
    0.787
Taci_1265
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.779
Taci_1270
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: afw:Anae109_1887 putative 6-pyruvoyl tetrahydropterin synthase.
  
    0.779
Taci_1266
Hypothetical protein; KEGG: rlt:Rleg2_1990 efflux transporter, RND family, MFP subunit.
       0.777
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
       0.775
Taci_1264
PFAM: DivIVA family protein; KEGG: bha:BH2546 cell-division initiation protein (septum placement).
       0.568
Taci_1271
PFAM: protein of unknown function DUF72; KEGG: gbm:Gbem_2197 protein of unknown function DUF72.
       0.558
Taci_1263
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pmy:Pmen_4397 ATP-dependent DNA helicase RecG.
  
    0.461
Taci_1010
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.458
rny
RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay.
       0.412
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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