STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1301PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: bha:BH0077 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Taci_1300
PFAM: protein of unknown function DUF501.
 
     0.851
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: argininosuccinate lyase; K01755 argininosuccinate lyase.
       0.809
Taci_1302
Hypothetical protein.
       0.676
Taci_1303
Hypothetical protein.
       0.669
Taci_1306
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.632
Taci_1297
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: hha:Hhal_1427 RNA polymerase, sigma 70 subunit, RpoD family.
 
     0.624
Taci_1305
PFAM: protein of unknown function DUF342; KEGG: bha:BH2430 hypothetical protein.
       0.610
Taci_1304
KEGG: hypothetical protein; K07203 FKBP12-rapamycin complex-associated protein.
       0.601
Taci_1307
Hypothetical protein.
       0.552
Taci_1309
CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; KEGG: bha:BH2434 inhibition of CheR-mediated methylation of MCPs.
       0.547
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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