STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1307Hypothetical protein. (349 aa)    
Predicted Functional Partners:
Taci_1306
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.809
cheD
CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
       0.782
Taci_1309
CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; KEGG: bha:BH2434 inhibition of CheR-mediated methylation of MCPs.
       0.782
Taci_1305
PFAM: protein of unknown function DUF342; KEGG: bha:BH2430 hypothetical protein.
       0.764
Taci_1310
CheA signal transduction histidine kinase; PFAM: P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP- binding region ATPase domain protein; KEGG: bsu:BSU16430 two-component sensor histidine kinase.
       0.746
Taci_1303
Hypothetical protein.
       0.703
Taci_1304
KEGG: hypothetical protein; K07203 FKBP12-rapamycin complex-associated protein.
       0.703
Taci_1302
Hypothetical protein.
       0.690
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
       0.611
Taci_1312
PFAM: type IV pilus assembly PilZ.
       0.611
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.