STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1441TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sit:TM1040_2067 TRAP dicarboxylate transporter-DctM subunit. (438 aa)    
Predicted Functional Partners:
Taci_1442
TRAP-type C4-dicarboxylate transport system small permease component-like protein; KEGG: sit:TM1040_2068 hypothetical protein.
 
 
 0.990
Taci_1443
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0493 DctP (periplasmic C4-dicarboxylate binding protein).
 
  
 0.923
Taci_1456
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bra:BRADO4734 putative periplasmic mannitol- binding protein; putative Trap-T transport system, DctP subunit.
 
  
 0.820
Taci_1440
Hypothetical protein.
       0.746
Taci_1455
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bpt:Bpet3340 TRAP-type dicarboxylat transporter, small permease component.
 
    0.537
Taci_1439
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dps:DP2347 GntR family transcription regulator.
 
    0.520
Taci_1430
PFAM: GntR domain protein; Ribonuclease R winged- helix domain protein; KEGG: dac:Daci_2815 GntR domain-containing protein.
 
     0.458
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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