STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1442TRAP-type C4-dicarboxylate transport system small permease component-like protein; KEGG: sit:TM1040_2068 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Taci_1441
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sit:TM1040_2067 TRAP dicarboxylate transporter-DctM subunit.
 
 
 0.990
Taci_1443
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP0493 DctP (periplasmic C4-dicarboxylate binding protein).
 
  
 0.953
Taci_0135
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: bcs:BCAN_A1214 TRAP transporter, 4TM/12TM fusion protein.
 
 
 0.886
Taci_1440
Hypothetical protein.
       0.746
Taci_1456
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bra:BRADO4734 putative periplasmic mannitol- binding protein; putative Trap-T transport system, DctP subunit.
 
  
 0.632
Taci_1439
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dps:DP2347 GntR family transcription regulator.
 
     0.580
Taci_1226
PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sfu:Sfum_3074 molybdopterin-guanine dinucleotide biosynthesis MobB region.
  
     0.539
Taci_0220
PFAM: GCN5-related N-acetyltransferase; KEGG: bcz:BCZK1679 acetyltransferase.
  
     0.497
Taci_0657
PFAM: O-antigen polymerase; KEGG: bvi:Bcep1808_2756 O-antigen polymerase.
  
     0.472
Taci_1363
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: aba:Acid345_2967 putative metal dependent phosphohydrolase.
  
     0.465
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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