STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1482KEGG: sat:SYN_00238 putative cytoplasmic protein. (104 aa)    
Predicted Functional Partners:
Taci_0239
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcz:BCZK3809 GntR family transcriptional regulator.
  
    0.547
Taci_0392
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1585 MinD family ATPase.
 
     0.501
Taci_0362
PFAM: Silent information regulator protein Sir2; KEGG: pca:Pcar_0631 Sir2 family NAD-dependent protein deacetylase.
  
    0.409
Taci_0162
Diguanylate cyclase and metal dependent phosphohydrolase; KEGG: aeh:Mlg_0691 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; metal- dependent phosphohydrolase HD sub domain; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein.
 
  
 0.407
Taci_0393
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3202 hypothetical protein.
  
     0.407
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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