STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1496KEGG: dno:DNO_0181 hypothetical protein. (1272 aa)    
Predicted Functional Partners:
Taci_1497
KEGG: noc:Noc_0055 hypothetical protein.
 
 
 0.951
Taci_1494
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dno:DNO_0180 S-adenosyl-L-methionine- dependent methyltransferases family protein VrlL.
 
     0.912
Taci_1492
PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicase; KEGG: dno:DNO_0177 DEAD helicase domain-containing protein VrlO.
 
   0.894
Taci_1491
PFAM: PglZ domain protein; KEGG: dol:Dole_0434 alkaline phosphatase domain- containing protein.
 
    0.886
Taci_1490
KEGG: dol:Dole_0433 hypothetical protein.
 
     0.884
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
  0.870
Taci_1079
DNA polymerase I; KEGG: bcy:Bcer98_3272 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2.
  
  
 0.832
Taci_1498
TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: sat:SYN_01853 MerR family regulatory protein.
 
     0.761
Taci_1495
PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein.
  
    0.644
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
  
 0.604
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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