STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1523TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cvi:CV_0400 hypothetical protein. (228 aa)    
Predicted Functional Partners:
Taci_1522
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bma:BMAA1803 biopolymer ExbD/TolR family transporter.
 
 
 0.996
Taci_1521
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsh:Dshi_0569 MotA/TolQ/ExbB proton channel.
 
 
 0.994
Taci_1524
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cko:CKO_03025 vitamin B12/cobalamin outer membrane transporter.
 
 
 
 0.945
Taci_1518
PFAM: periplasmic binding protein; KEGG: noc:Noc_0840 periplasmic binding protein.
  
  
 0.779
Taci_1520
PFAM: transport system permease protein; KEGG: noc:Noc_0838 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.769
Taci_1519
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A0491 ABC transporter component.
  
  
 0.763
Taci_0944
Hypothetical protein.
  
    0.539
Taci_1540
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cha:CHAB381_0329 mercuric transport protein periplasmic component.
   
  
 0.483
Taci_0107
PFAM: FeoA family protein; iron dependent repressor; SMART: iron dependent repressor; KEGG: dal:Dalk_2732 iron (metal) dependent repressor, DtxR family.
  
  
 0.474
Taci_1010
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
 
   
 0.470
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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