STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1540PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cha:CHAB381_0329 mercuric transport protein periplasmic component. (150 aa)    
Predicted Functional Partners:
Taci_0499
PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: rpa:RPA3562 arsenite S- adenosylmethyltransferase.
 
 
    0.687
Taci_1546
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bca:BCE_0370 hypothetical protein.
 
     0.539
Taci_1537
PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: lip:LI1170 chemotaxis signal transduction protein.
       0.507
Taci_1538
KEGG: aba:Acid345_0185 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein.
       0.507
Taci_1539
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: vvy:VV0995 phosphodiesterase.
       0.507
Taci_1541
PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_0793 methyl-accepting chemotaxis sensory transducer.
       0.500
Taci_1523
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cvi:CV_0400 hypothetical protein.
   
  
 0.483
Taci_1522
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bma:BMAA1803 biopolymer ExbD/TolR family transporter.
   
  
 0.478
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
     
 0.427
Taci_1521
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsh:Dshi_0569 MotA/TolQ/ExbB proton channel.
   
  
 0.409
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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