STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1561PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: mfa:Mfla_2225 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A. (261 aa)    
Predicted Functional Partners:
Taci_1055
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gsu:GSU1491 type IV pilus biogenesis protein PilB.
 
 
 0.914
Taci_1053
PFAM: type II secretion system protein; KEGG: bba:Bd1511 PilC; type II secretion system protein.
 
  
 0.907
Taci_1054
KEGG: gsu:GSU1492 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.852
Taci_1348
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: glo:Glov_3267 DNA protecting protein DprA.
  
  
 0.804
Taci_1122
KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.
   
  
 0.721
Taci_1043
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: sfu:Sfum_0540 type IV pilus secretin PilQ; Belongs to the bacterial secretin family.
 
   
 0.565
Taci_1562
TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: nar:Saro_3850 4-oxalocrotonate tautomerase.
       0.565
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.495
Taci_1121
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: tmz:Tmz1t_1990 DNA internalization-related competence protein ComEC/Rec2.
   
  
 0.495
Taci_1636
PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: acp:A2cp1_0207 shikimate 5-dehydrogenase; Belongs to the shikimate dehydrogenase family.
  
    0.487
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.