STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1586PFAM: protein of unknown function DUF955; KEGG: mag:amb3753 Zn peptidase. (129 aa)    
Predicted Functional Partners:
Taci_1585
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sme:SM_b20754 hypothetical protein.
 
  
 0.786
Taci_0807
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
     0.665
Taci_0666
PFAM: flagellin domain protein; KEGG: psa:PST_1398 flagellar hook-associated protein FlgL.
  
   
 0.620
Taci_1587
KEGG: gbm:Gbem_2068 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein.
       0.565
Taci_0316
Putative diguanylate cyclase; KEGG: hch:HCH_03148 response regulator.
  
     0.564
Taci_0183
PFAM: protein of unknown function DUF6 transmembrane; KEGG: amc:MADE_00423 predicted permease, DMT superfamily protein.
  
     0.550
Taci_1676
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: dps:DP0218 cobyrinic acid A,C-diamide synthase (CobB).
  
     0.521
Taci_0504
KEGG: oca:OCAR_5226 hypothetical protein.
  
     0.483
Taci_0047
Conserved hypothetical protein; KEGG: dds:Ddes_0036 nucleoside recognition domain protein.
  
     0.463
Taci_1048
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: dac:Daci_2885 fimbrial assembly protein.
  
     0.462
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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