STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1594KEGG: sfu:Sfum_0396 hydrolase (HAD superfamily). (396 aa)    
Predicted Functional Partners:
Taci_1593
PFAM: dihydrodipicolinate reductase; KEGG: bcr:BCAH187_A1699 dihydrodipicolinate reductase; Belongs to the DapB family.
       0.727
Taci_1592
PFAM: flavin reductase domain protein FMN-binding; KEGG: dvm:DvMF_1524 flavin reductase domain protein FMN-binding.
 
     0.684
Taci_0507
PFAM: NLP/P60 protein; KEGG: dvu:DVU0896 NLP/P60 family lipoprotein.
  
     0.663
Taci_1595
Hypothetical protein; KEGG: acp:A2cp1_4066 transcriptional regulator-like protein.
       0.595
Taci_1590
PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bha:BH3915 methyl-accepting chemotaxis protein.
       0.410
Taci_1591
Hypothetical protein; KEGG: mfa:Mfla_0352 methyl-accepting chemotaxis sensory transducer.
       0.410
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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