STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1605PFAM: B3/4 domain protein; KEGG: asu:Asuc_1302 B3/4 domain-containing protein. (235 aa)    
Predicted Functional Partners:
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bha:BH0098 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.697
argS
KEGG: pca:Pcar_0742 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
    
 0.568
arcA
KEGG: bcu:BCAH820_0407 arginine deiminase; TIGRFAM: arginine deiminase; PFAM: amidinotransferase.
 
     0.564
Taci_1601
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_1572 molybdate ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
    0.513
Taci_1602
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0230 molybdate porter.
       0.507
Taci_1603
TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: saz:Sama_3529 molybdenum ABC transporter, periplasmic molybdenum-binding protein.
       0.507
Taci_1604
KEGG: rso:RSc0048 putative transcription regulator protein; Belongs to the Fur family.
       0.507
Taci_1606
Hypothetical protein.
       0.496
Taci_1458
TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: bcu:BCAH820_0409 arginine/ornithine antiporter.
  
     0.443
Taci_1600
Molybdopterin binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.410
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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