STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1672Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: spe:Spro_3347 transcriptional regulator. (435 aa)    
Predicted Functional Partners:
Taci_1671
Phosphoribosyl-dephospho-CoA transferase (holo- ACP synthetase)-like protein; KEGG: ppd:Ppro_1083 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
       0.808
Taci_1674
PFAM: AMP-dependent synthetase and ligase; KEGG: bpt:Bpet0716 acyl-CoA synthetase, long-chain- fatty-acid--CoA ligase.
     
 0.776
Taci_1673
KEGG: ppd:Ppro_1088 citrate lyase ligase; TIGRFAM: citrate lyase ligase; cytidyltransferase- related domain protein; PFAM: Citrate lyase ligase domain protein; GCN5- related N-acetyltransferase; cytidylyltransferase; SMART: Citrate lyase ligase domain protein.
       0.773
Taci_1675
Amidohydrolase; KEGG: azc:AZC_1987 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.613
Taci_1676
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: dps:DP0218 cobyrinic acid A,C-diamide synthase (CobB).
       0.494
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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