STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1725PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_1434 histidine triad (HIT) protein. (161 aa)    
Predicted Functional Partners:
Taci_1726
PFAM: protein of unknown function UPF0029; KEGG: maq:Maqu_2867 hypothetical protein.
       0.825
Taci_1724
parB-like partition protein; KEGG: rru:Rru_A3628 chromosome segregation DNA- binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the ParB family.
       0.785
Taci_1723
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bsu:BSU40970 chromosome partitioning protein; transcriptional regulator.
       0.784
thrS
KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.758
Taci_1722
PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: bsu:BSU17620 hypothetical protein.
  
    0.536
Taci_1436
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sus:Acid_6996 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
   0.438
Taci_1721
KEGG: bcj:BCAS0321 hypothetical glycine-rich autotransporter protein.
       0.408
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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