STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Taci_1749PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1702 ferredoxin. (242 aa)    
Predicted Functional Partners:
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
 
     0.812
Taci_1748
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bha:BH0656 hypothetical protein.
     
 0.811
Taci_1745
PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: sfu:Sfum_0998 Appr-1-p processing domain protein.
       0.540
Taci_1746
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rpc:RPC_3293 exonuclease.
       0.540
Taci_1747
Hypothetical protein.
       0.540
Taci_1751
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bja:blr2697 VirA-like protein.
 
     0.507
Taci_0150
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1605 NAD-reducing iron-only hydrogenase large subunit.
   
 
 0.502
Taci_0598
PFAM: protein of unknown function DUF1121; KEGG: dal:Dalk_2774 protein of unknown function DUF1121.
  
 
   0.438
Taci_1752
PFAM: Chromate transporter; KEGG: pin:Ping_2327 chromate transporter, chromate ion transporter (CHR) family protein.
       0.427
Taci_1753
PFAM: Chromate transporter; KEGG: ank:AnaeK_0471 chromate transporter, chromate ion transporter (CHR) family.
       0.427
Your Current Organism:
Thermanaerovibrio acidaminovorans
NCBI taxonomy Id: 525903
Other names: T. acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans DSM 6589, Thermanaerovibrio acidaminovorans str. DSM 6589, Thermanaerovibrio acidaminovorans strain DSM 6589
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