STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0006PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: met:M446_3854 FAD dependent oxidoreductase. (556 aa)    
Predicted Functional Partners:
Tter_2046
PFAM: Squalene/phytoene synthase; KEGG: bav:BAV2418 phytoene synthase.
 
  
 0.878
Tter_0005
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bha:BH3101 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.717
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.487
Tter_1872
KEGG: sus:Acid_2208 magnesium protoporphyrin chelatase, putative.
 
  
 0.450
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
      
 0.408
Tter_2133
PFAM: homocysteine S-methyltransferase; KEGG: hypothetical protein.
  
     0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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