STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0023TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; KEGG: psb:Psyr_0428 monooxygenase, FAD-binding. (398 aa)    
Predicted Functional Partners:
Tter_0655
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit.
  
 
 0.730
Tter_0024
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dal:Dalk_1254 protein of unknown function DUF6 transmembrane.
  
    0.723
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.718
Tter_0021
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
     
 0.713
Tter_0022
PFAM: cyclase/dehydrase; KEGG: sgl:SG1803 hypothetical protein.
       0.702
Tter_0020
PFAM: putative RNA methylase; Methyltransferase type 11; methyltransferase small; KEGG: THUMPD3; THUMP domain containing 3.
       0.686
Tter_0019
TIGRFAM: ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: pca:Pcar_2428 ATPase.
       0.671
Tter_0654
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit.
  
 
 0.623
Tter_2046
PFAM: Squalene/phytoene synthase; KEGG: bav:BAV2418 phytoene synthase.
 
  
 0.563
Tter_0252
PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_PC0000391 probable nitrilotriacetate monooxygenase component B protein.
    
 0.548
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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