STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0113TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: aba:Acid345_3354 phage SPO1 DNA polymerase- related protein. (206 aa)    
Predicted Functional Partners:
Tter_0795
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sat:SYN_02178 uracil DNA glycosylase superfamily protein.
  
  
 
0.917
Tter_0111
KEGG: bca:BCE_4194 2',3'-cyclic nucleotide 2'- phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein.
       0.773
Tter_0112
KEGG: aav:Aave_3522 hypothetical protein.
       0.773
Tter_0110
PFAM: protein of unknown function DUF971; KEGG: sus:Acid_1286 hypothetical protein.
       0.541
Tter_0045
PFAM: peptidase M22 glycoprotease; KEGG: sfu:Sfum_1786 peptidase M22, glycoprotease.
  
    0.410
Tter_0779
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: aba:Acid345_2223 single-strand binding protein.
   
   0.403
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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