STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0115PFAM: alpha/beta hydrolase fold; KEGG: lpf:lpl0291 hypothetical protein. (267 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.625
Tter_0252
PFAM: flavin reductase domain protein FMN-binding; KEGG: rec:RHECIAT_PC0000391 probable nitrilotriacetate monooxygenase component B protein.
 
  
 0.605
Tter_0114
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.593
Tter_0116
PFAM: Hyaluronidase; KEGG: Hyaluronidase family protein.
  
    0.557
Tter_1199
PFAM: alpha/beta hydrolase fold; KEGG: prw:PsycPRwf_0993 alpha/beta hydrolase fold.
  
     0.492
Tter_1183
PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: bsu:BSU04520 hypothetical protein.
  
 
 0.474
Tter_0362
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bsu:BSU37170 acyl-CoA dehydrogenase.
   
 
 0.405
Tter_0364
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bcb:BCB4264_A5464 acyl-CoA dehydrogenase.
   
 
 0.405
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.