STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0116PFAM: Hyaluronidase; KEGG: Hyaluronidase family protein. (474 aa)    
Predicted Functional Partners:
Tter_0694
KEGG: aba:Acid345_2130 formiminotransferase-like; TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase-cyclodeaminase; Formiminotransferase domain protein; Formiminotransferase domain protein.
 
    0.584
Tter_0115
PFAM: alpha/beta hydrolase fold; KEGG: lpf:lpl0291 hypothetical protein.
  
    0.557
Tter_2325
PFAM: protein of unknown function DUF402.
  
     0.491
Tter_2447
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: hypothetical protein; K01195 beta- glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 0.470
Tter_0114
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.444
Tter_2101
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase.
  
     0.423
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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