STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0143Transcriptional regulator, CdaR; KEGG: eca:ECA3300 carbohydrate diacid transcriptional activator CdaR. (388 aa)    
Predicted Functional Partners:
Tter_0150
PFAM: glycosyl transferase group 1; KEGG: tbd:Tbd_0743 glycosyltransferase.
 
     0.785
Tter_0148
PFAM: glycosyl transferase family 9; KEGG: eba:ebA6912 ADP-heptose--LPS heptosyltransferase II.
 
     0.763
Tter_0147
PFAM: glycosyl transferase family 9; KEGG: tbd:Tbd_0742 ADP-heptose--LPS heptosyltransferase II.
 
     0.716
Tter_0149
PFAM: glycosyl transferase family 9; KEGG: bam:Bamb_5648 glycosyl transferase family protein.
 
     0.688
Tter_1388
Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: bha:BH1994 hypothetical protein.
  
     0.674
Tter_0448
PFAM: glycosyl transferase family 2; KEGG: azo:azo1719 hypothetical protein.
  
     0.658
Tter_0152
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nmu:Nmul_A1794 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.627
Tter_0151
PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A1795 phosphoheptose isomerase.
 
     0.593
hldE
Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
     0.538
Tter_0141
PFAM: histidine triad (HIT) protein; KEGG: sus:Acid_2826 histidine triad (HIT) protein.
       0.523
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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