STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0155PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel. (332 aa)    
Predicted Functional Partners:
Tter_0156
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH0710 hypothetical protein.
 
    0.901
Tter_0157
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_2336 short-chain dehydrogenase/reductase SDR.
       0.558
Tter_0158
KEGG: glucose/sorbosone dehydrogenase-like protein.
       0.497
Tter_1524
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sus:Acid_1483 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
  
  
 0.467
Tter_0153
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sus:Acid_0418 GHMP kinase.
       0.456
Tter_0154
PFAM: sugar isomerase (SIS); KEGG: sus:Acid_2237 sugar isomerase (SIS).
       0.456
Tter_1525
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ccs:CCNA_01359 myo-inositol catabolism protein IolB.
  
  
 0.438
Tter_0152
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nmu:Nmul_A1794 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.432
Tter_1938
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
     0.420
Tter_2694
PFAM: aminoglycoside phosphotransferase; KEGG: sme:SMc04360 hypothetical protein.
  
     0.412
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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