STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0159KEGG: aba:Acid345_1209 hypothetical protein. (106 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: ribosomal protein L28; K02902 large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
   0.484
Tter_0460
Hypothetical protein.
  
     0.470
Tter_0162
PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: acp:A2cp1_3045 protein of unknown function DUF224 cysteine-rich region domain protein.
   
   0.467
Tter_0160
PFAM: FAD linked oxidase domain protein; KEGG: afw:Anae109_2921 D-lactate dehydrogenase (cytochrome).
       0.427
Tter_0161
PFAM: FAD linked oxidase domain protein; KEGG: ade:Adeh_2866 FAD linked oxidase-like.
       0.427
pheT
KEGG: dol:Dole_3039 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.424
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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