STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0197Hypothetical protein. (172 aa)    
Predicted Functional Partners:
Tter_0198
PFAM: protein of unknown function DUF421; KEGG: psb:Psyr_0769 hypothetical protein.
       0.783
Tter_0199
KEGG: hypothetical protein.
       0.709
Tter_0200
PFAM: zinc finger C2H2-type domain protein; SMART: Zinc finger, C2H2-like; KEGG: hypothetical protein.
       0.709
ilvD
KEGG: sus:Acid_0606 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
       0.517
Tter_0201
PFAM: Acetyl xylan esterase; KEGG: mlo:mlr6993 acetyl xylan esterase.
       0.508
Tter_0202
PFAM: Luciferase-like monooxygenase; KEGG: swi:Swit_0704 luciferase family protein.
       0.478
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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