STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0218PFAM: nitroreductase; KEGG: gsu:GSU2525 nitroreductase family protein. (180 aa)    
Predicted Functional Partners:
Tter_1856
PFAM: nitroreductase; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gsu:GSU2525 nitroreductase family protein.
  
     0.693
menE
O-succinylbenzoate-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
   
 
 0.596
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.525
Tter_1742
Hypothetical protein.
   
 
 0.511
Tter_0217
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase.
       0.481
Tter_2443
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gme:Gmet_2237 methylmalonyl-CoA epimerase.
 
    0.425
Tter_0474
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.421
Tter_1123
PFAM: ABC-2 type transporter; KEGG: ank:AnaeK_4023 ABC-2 type transporter.
  
  
 0.418
Tter_1438
PFAM: ABC-2 type transporter; KEGG: pag:PLES_25922 inner membrane permease protein.
  
  
 0.418
Tter_1853
PFAM: ABC-2 type transporter; KEGG: pmr:PMI0616 ABC transporter, permease protein.
  
  
 0.418
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.