STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0220PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1971 glycosyl transferase family protein. (353 aa)    
Predicted Functional Partners:
Tter_0221
PFAM: polysaccharide biosynthesis protein; KEGG: bat:BAS4308 stage V sporulation protein B.
 
  
 0.764
Tter_0104
PFAM: glycosyl transferase family 2; KEGG: ppd:Ppro_2693 glycosyl transferase family protein.
  
     0.558
Tter_0222
PFAM: peptidase M50; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: noc:Noc_1011 peptidase M50; Belongs to the peptidase M50B family.
  
    0.530
Tter_1842
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: shn:Shewana3_2005 WecB/TagA/CpsF family glycosyl transferase.
  
  
 0.455
Tter_1710
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein.
 
  
 0.413
Tter_2802
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4641 ABC transporter related.
 
  
 0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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