STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0233PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dol:Dole_2627 methyltransferase type 11. (305 aa)    
Predicted Functional Partners:
Tter_0232
KEGG: glo:Glov_2744 hypothetical protein.
 
     0.832
Tter_0838
PFAM: metallophosphoesterase; KEGG: scl:sce2733 bis(5'-nucleosyl)- tetraphosphatase (symmetrical).
 
 
   0.711
Tter_0234
TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: pap:PSPA7_2488 hypothetical protein.
       0.708
Tter_0487
PFAM: glycosyl transferase family 2; KEGG: gsu:GSU1789 glycosyl transferase, group 2 family protein.
  
 0.690
Tter_0235
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.577
Tter_1658
PFAM: glycosyl transferase family 2; KEGG: hch:HCH_06165 cell wall biosynthesis glycosyltransferase.
  
 0.549
Tter_2194
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 
 0.526
Tter_0236
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4236 heme exporter protein CcmA.
       0.491
Tter_0237
PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: mgm:Mmc1_3499 cytochrome c-type biogenesis protein CcmB.
       0.491
Tter_0238
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_2302 cytochrome c assembly protein.
       0.491
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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