STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0240PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE. (188 aa)    
Predicted Functional Partners:
Tter_0238
PFAM: cytochrome c assembly protein; KEGG: aba:Acid345_2302 cytochrome c assembly protein.
 
  
 0.770
Tter_0237
PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: mgm:Mmc1_3499 cytochrome c-type biogenesis protein CcmB.
 
     0.763
Tter_0241
PFAM: periplasmic binding protein; KEGG: pzu:PHZ_c1916 probable periplasmic substrate- binding protein.
       0.705
Tter_0236
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4236 heme exporter protein CcmA.
  
    0.704
Tter_0239
Hypothetical protein.
       0.701
Tter_0235
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
     0.661
Tter_1507
PFAM: cytochrome c assembly protein; KEGG: sus:Acid_4232 cytochrome c assembly protein.
     0.656
Tter_0242
KEGG: hypothetical protein.
       0.568
Tter_0234
TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: pap:PSPA7_2488 hypothetical protein.
       0.510
Tter_0233
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: dol:Dole_2627 methyltransferase type 11.
  
    0.462
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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