STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0247PFAM: blue (type 1) copper domain protein; KEGG: aba:Acid345_1788 plastocyanin-like protein. (157 aa)    
Predicted Functional Partners:
Tter_2238
PFAM: multicopper oxidase type 3; multicopper oxidase type 1; blue (type 1) copper domain protein; multicopper oxidase type 2; KEGG: hypothetical protein.
 
 
 
 0.618
Tter_1286
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; KEGG: haloacid dehalogenase-like hydrolase family protein.
   
 
 0.543
Tter_0532
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: bsu:BSU06300 spore coat protein (outer).
   
 
 0.522
Tter_2149
KEGG: oca:OCAR_7249 copper-containing nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 3; blue (type 1) copper domain protein; multicopper oxidase type 2.
   
 
 0.522
Tter_0245
Putative transmembrane anti-sigma factor; KEGG: aba:Acid345_0544 hypothetical protein.
       0.509
Tter_0246
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sus:Acid_7860 ECF subfamily RNA polymerase sigma-24 factor.
       0.509
Tter_1532
KEGG: dds:Ddes_1656 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
   0.474
Tter_1043
KEGG: mfa:Mfla_0320 protein serine/threonine phosphatases.
   
   0.467
Tter_1117
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pna:Pnap_4548 40-residue YVTN family beta- propeller repeat protein.
   
   0.467
Tter_1311
PFAM: selenium-binding protein; KEGG: rde:RD1_2378 selenium binding protein.
   
   0.466
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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