STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0262PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: aba:Acid345_4167 pyrrolo-quinoline quinone. (407 aa)    
Predicted Functional Partners:
Tter_0261
Hypothetical protein.
       0.723
Tter_0263
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce3058 sugar ABC transporter, permease protein.
       0.505
Tter_0266
PFAM: Spermine synthase; KEGG: ade:Adeh_3062 spermine synthase.
 
    0.460
Tter_0264
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SM_b20969 putative sugar uptake ABC transporter permease protein.
       0.458
Tter_0781
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: bid:Bind_3255 PpiC-type peptidyl-prolyl cis- trans isomerase.
   
 
 0.452
Tter_1716
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sfu:Sfum_0568 PpiC-type peptidyl-prolyl cis- trans isomerase.
   
 
 0.452
Tter_0260
Hypothetical protein.
       0.443
Tter_1705
KEGG: dol:Dole_0481 putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein.
   
  
 0.418
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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