STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0267PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_C1347 putative mandelate racemase/muconate lactonizing enzyme. (442 aa)    
Predicted Functional Partners:
Tter_0272
PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00494 L-fucose dehydrogenase protein.
    0.673
Tter_0269
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce8243 fumarylacetoacetase family protein.
     
 0.631
Tter_0268
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB1748 short chain dehydrogenase.
       0.620
Tter_0270
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ypm:YP_1303 putative D-isomer specific 2- hydroxyacid dehydrogenase family protein.
       0.596
Tter_0271
PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter.
       0.592
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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