STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0271PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter. (387 aa)    
Predicted Functional Partners:
Tter_0398
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce5040 trehalose/maltose transporter permease protein.
  
   0.797
Tter_0399
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce5039 trehalose/maltose transport system, permease protein.
  
   0.788
Tter_0270
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ypm:YP_1303 putative D-isomer specific 2- hydroxyacid dehydrogenase family protein.
       0.773
Tter_0269
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce8243 fumarylacetoacetase family protein.
       0.738
Tter_0268
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB1748 short chain dehydrogenase.
       0.737
Tter_0973
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bca:BCE_4067 sugar ABC transporter, ATP- binding protein.
  
  0.724
Tter_2491
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rle:RL2899 putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
  
  0.724
Tter_2492
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_2015 ABC transporter related; Belongs to the ABC transporter superfamily.
  
  0.724
Tter_2489
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2012 binding-protein-dependent transport systems inner membrane component.
  
   0.710
Tter_2488
PFAM: extracellular solute-binding protein family 1; KEGG: acr:Acry_2566 extracellular solute-binding protein.
  
     0.700
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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