STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0272PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00494 L-fucose dehydrogenase protein. (322 aa)    
Predicted Functional Partners:
Tter_0164
PFAM: ROK family protein; KEGG: sde:Sde_2639 fructokinase.
     
  0.800
Tter_0267
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_C1347 putative mandelate racemase/muconate lactonizing enzyme.
    0.673
Tter_0274
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: probable dehydrogenase.
  
    0.607
Tter_0273
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1947 xylose isomerase domain- containing protein.
  
    0.602
Tter_1474
PFAM: oxidoreductase domain protein; aldo/keto reductase; Semialdehyde dehydrogenase NAD - binding; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: mlo:mlr6441 oxidoreductase.
  
    0.571
Tter_0270
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ypm:YP_1303 putative D-isomer specific 2- hydroxyacid dehydrogenase family protein.
  
    0.561
Tter_0271
PFAM: extracellular solute-binding protein family 1; KEGG: sugar ABC transporter.
  
    0.546
Tter_0268
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbr:BB1748 short chain dehydrogenase.
      0.525
Tter_0269
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce8243 fumarylacetoacetase family protein.
       0.522
Tter_1972
PFAM: aldo/keto reductase; KEGG: ade:Adeh_3218 aldo/keto reductase.
  
 
0.415
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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