STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0277PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_02006 lipoprotein releasing system ATP-binding protein LolD. (334 aa)    
Predicted Functional Partners:
Tter_1798
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr4464 ABC transporter integral membrane protein.
 
 
 0.999
Tter_0276
PFAM: protein of unknown function DUF214; KEGG: hypothetical protein.
 
 
 0.982
Tter_0275
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_3531 secretion protein HlyD.
 
 
 0.949
Tter_0898
KEGG: scl:sce4299 peptide ABC transporter, ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.904
Tter_0904
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl01_2853 amino acid ABC transporter permease.
 
 
  
 0.844
Tter_0278
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo3286 ABC transporter ATP-binding protein.
 
    
0.795
Tter_2174
PFAM: protein of unknown function DUF214; KEGG: bsu:BSU34690 hypothetical protein.
 
 
 0.737
Tter_0279
Hypothetical protein.
       0.558
Tter_2075
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4300 peptide ABC transporter, permease protein.
 
 
    0.528
hisS
KEGG: wsu:WS1449 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
 
   
 0.438
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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