STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0323PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ypk:y0252 hypothetical protein. (536 aa)    
Predicted Functional Partners:
Tter_0322
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: jan:Jann_1468 oxidoreductase-like.
  
    0.817
argG-2
KEGG: sfu:Sfum_0061 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.732
Tter_0621
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfu:Sfum_1980 xylose isomerase domain protein TIM barrel.
  
     0.718
Tter_1112
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: swi:Swit_1902 xylose isomerase domain- containing protein.
  
     0.710
Tter_0321
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: bha:BH2897 acetylornithine aminotransferase.
       0.693
Tter_0895
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain- containing protein.
  
     0.683
lysZ
Acetylglutamate kinase; Catalyzes the phosphorylation of LysW-gamma-alpha- aminoadipate; Belongs to the acetylglutamate kinase family. LysZ subfamily.
       0.665
Tter_2433
KEGG: bsu:BSU30250 hypothetical protein.
  
     0.617
Tter_2228
KEGG: ect:ECIAI39_3749 hypothetical protein.
 
     0.614
Tter_0319
KEGG: gur:Gura_1051 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.612
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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