STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0401PFAM: protein of unknown function DUF512; KEGG: gbm:Gbem_0981 protein of unknown function DUF512. (487 aa)    
Predicted Functional Partners:
Tter_0400
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: afw:Anae109_2621 phosphotransferase domain- containing protein.
       0.773
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
    0.759
Tter_0398
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce5040 trehalose/maltose transporter permease protein.
       0.642
Tter_0399
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce5039 trehalose/maltose transport system, permease protein.
       0.642
Tter_1648
Hypothetical protein; KEGG: PLEC1; plectin 1, intermediate filament binding protein 500kDa; K10388 plectin.
  
     0.535
Tter_0397
PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce5041 trehalose/maltose-binding protein.
       0.482
Tter_0820
Hypothetical protein.
 
     0.405
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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