STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0404KEGG: hypothetical protein. (138 aa)    
Predicted Functional Partners:
Tter_0632
PFAM: Dynamin family protein; Miro domain protein; GTP-binding protein HSR1-related; KEGG: hypothetical protein.
  
     0.641
Tter_0132
PFAM: thiamineS protein; KEGG: CNX7/SIR5; CNX7/SIR5; catalytic.
  
     0.605
Tter_2202
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: galactokinase-like protein.
  
     0.588
Tter_1062
KEGG: ccv:CCV52592_0502 cytoplasmic membrane protein.
  
     0.530
Tter_0405
PFAM: GCN5-related N-acetyltransferase; KEGG: rle:pRL110512 hypothetical protein.
       0.465
Tter_0535
PFAM: YceI family protein; KEGG: sus:Acid_1354 YceI family protein; Belongs to the UPF0312 family.
  
     0.441
Tter_0406
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: bha:BH1248 NADH-dependent dyhydrogenase.
       0.432
Tter_0403
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0643 putative transport system permease protein.
       0.406
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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