STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0425PFAM: putative esterase; KEGG: mxa:MXAN_4392 putative esterase. (337 aa)    
Predicted Functional Partners:
Tter_0424
Hypothetical protein; KEGG: bpt:Bpet0646 DMT superfamily permease.
       0.773
Tter_0423
KEGG: bsu:BSU29530 signal peptide peptidase; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.
       0.757
Tter_1479
Endo-1,4-beta-xylanase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
  
 
 0.600
Tter_1200
KEGG: ypm:YP_2290 hypothetical protein.
    
   0.536
Tter_1680
PFAM: protein of unknown function DUF255; KEGG: dal:Dalk_2829 protein of unknown function DUF255.
    
   0.536
Tter_0426
Transcriptional regulator, LacI family; KEGG: vpa:VP0252 DNA-binding transcriptional regulator CytR; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
       0.470
Tter_2281
PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_2407 hypothetical protein.
  
    0.458
Tter_2073
PFAM: extracellular solute-binding protein family 5; KEGG: scl:sce4302 ABC-type dipeptide transport system, periplasmic component.
  
     0.409
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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