STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (354 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.985
Tter_1226
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: acp:A2cp1_4094 thioredoxin reductase.
     
 0.916
Tter_1696
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sus:Acid_7702 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 0.911
Tter_1343
Aminotransferase class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
    
 0.885
Tter_1551
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce7329 cysteine desulfurase.
    
 0.883
Tter_1385
KEGG: sat:SYN_02191 selenocysteine-specific protein translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein.
 
   
 0.853
Tter_0449
PFAM: GCN5-related N-acetyltransferase; KEGG: hypothetical protein.
       0.513
Tter_1595
KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit.
     
 0.508
Tter_2078
PFAM: permease; KEGG: bph:Bphy_1637 permease.
 
     0.485
Tter_0608
Formate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
   
 0.400
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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