STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0462Hypothetical protein; KEGG: pca:Pcar_2141 ABC-type transport system, putative ATPase subunit. (280 aa)    
Predicted Functional Partners:
Tter_0461
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acp:A2cp1_0670 ABC transporter related.
 
 
 0.949
Tter_0460
Hypothetical protein.
 
     0.897
Tter_2715
KEGG: sus:Acid_0589 hypothetical protein.
  
     0.683
Tter_0459
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sus:Acid_5737 ECF subfamily RNA polymerase sigma-24 factor.
 
    0.626
Tter_1049
PFAM: integrase domain protein SAM domain protein; KEGG: noc:Noc_0687 phage integrase; Belongs to the 'phage' integrase family.
  
     0.530
Tter_2680
PFAM: SCP-like extracellular; KEGG: sun:SUN_0720 hypothetical protein.
  
     0.458
Tter_0009
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; SH3 domain protein; KEGG: bcb:BCB4264_A1909 peptidase, M23/M37 family.
  
     0.409
Tter_2109
PFAM: Carbohydrate-binding family 9; KEGG: bph:Bphy_6730 hypothetical protein.
 
    0.407
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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