STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0475PFAM: ABC-2 type transporter; KEGG: tcx:Tcr_0985 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Tter_0476
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4381 ABC transporter related.
     0.927
Tter_0477
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: xca:xccb100_3196 RNA polymerase ECF-type sigma factor.
       0.773
Tter_2399
PFAM: ABC-2 type transporter; KEGG: aba:Acid345_0285 ABC multidrug efflux pump, inner membrane subunit.
 
 
  0.610
Tter_2250
PFAM: ABC-2 type transporter; KEGG: har:HEAR2357 ABC-type drug export system, membrane protein.
 
 
  0.594
Tter_1438
PFAM: ABC-2 type transporter; KEGG: pag:PLES_25922 inner membrane permease protein.
 
 
  0.571
Tter_2579
PFAM: ABC-2 type transporter; KEGG: bcb:BCB4264_A2507 putative ABC transporter, permease protein.
 
 
  0.565
Tter_2608
PFAM: ABC-2 type transporter; KEGG: bba:Bd1727 ABC transporter, permease protein, putative.
 
  
 0.502
Tter_1123
PFAM: ABC-2 type transporter; KEGG: ank:AnaeK_4023 ABC-2 type transporter.
  
 
  0.501
Tter_1853
PFAM: ABC-2 type transporter; KEGG: pmr:PMI0616 ABC transporter, permease protein.
  
 
  0.501
Tter_1580
PFAM: ABC-3 protein; KEGG: bcb:BCB4264_A4398 putative cation ABC transporter, permease protein.
 
  
  0.464
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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