STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0493PFAM: protein of unknown function DUF58; KEGG: bcr:BCAH187_A3053 hypothetical protein. (398 aa)    
Predicted Functional Partners:
Tter_0494
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bcr:BCAH187_A2274 methanol dehydrogenase regulatory protein; magnesium chelatase.
 
  
 0.883
Tter_0492
Hypothetical protein.
       0.783
Tter_1078
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like.
 
  
 0.781
Tter_1076
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein.
 
  
 0.563
Tter_2275
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gur:Gura_0187 ATPase.
 
  
 0.561
Tter_0495
Penicillin-binding protein 2; KEGG: sfu:Sfum_2589 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; Penicillin-binding protein dimerisation domain.
       0.532
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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