STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0495Penicillin-binding protein 2; KEGG: sfu:Sfum_2589 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; Penicillin-binding protein dimerisation domain. (775 aa)    
Predicted Functional Partners:
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.934
Tter_1624
Penicillin-binding protein 2; KEGG: sfu:Sfum_2589 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
  
 
0.928
Tter_1376
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: glo:Glov_2492 penicillin-binding protein 2.
  
  
 
0.926
Tter_1628
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.872
Tter_1607
TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: glo:Glov_0671 cell division protein FtsW; Belongs to the SEDS family.
 
 0.810
Tter_0061
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: pca:Pcar_1049 rod shape-determining protein MreB.
 
 
 0.809
Tter_1629
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: gsu:GSU2089 rod shape-determining protein MreB.
 
 
 0.808
Tter_1377
PFAM: cell cycle protein; KEGG: sat:SYN_01745 cell division protein; Belongs to the SEDS family.
 
 0.787
Tter_0690
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bsu:BSU23480 penicillin binding protein (putative D-alanyl-D-alanine carboxypeptidase); Belongs to the peptidase S11 family.
 
 
 0.716
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanylligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
  
 0.713
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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