STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (307 aa)    
Predicted Functional Partners:
Tter_0541
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: smd:Smed_5686 glycosyl transferase group 1.
       0.545
Tter_0539
PFAM: heat shock protein Hsp20; KEGG: aba:Acid345_4766 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
       0.535
Tter_0542
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: csa:Csal_0292 4-hydroxyphenylpyruvate dioxygenase.
       0.499
dinG
DNA polymerase III, epsilon subunit; 3'-5' exonuclease.
  
  
 0.475
Tter_0977
TIGRFAM: isoleucyl-tRNA synthetase; KEGG: bcb:BCB4264_A2186 isoleucyl-tRNA synthetase.
 
  
 0.455
Tter_1101
PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU30160 hypothetical protein.
  
     0.431
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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