STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tter_0567PFAM: peptidase C60 sortase A and B; SH3 type 3 domain protein; KEGG: sfr:Sfri_1626 sortase family protein. (321 aa)    
Predicted Functional Partners:
Tter_0566
PFAM: protein of unknown function DUF62; KEGG: dal:Dalk_3152 protein of unknown function DUF62.
       0.547
Tter_2644
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1924 sugar transport system (sugar- binding protein).
  
     0.503
Tter_0755
TIGRFAM: anti-sigma factor; KEGG: tgr:Tgr7_1713 putative transmembrane anti- sigma factor.
  
     0.502
Tter_1017
Von Willebrand factor type A; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein; TIGRFAM: VWFA-related Acidobacterial domain protein; PFAM: von Willebrand factor type A; type II secretion system protein; SMART: von Willebrand factor type A.
  
  
 0.491
Tter_0341
KEGG: aba:Acid345_0544 hypothetical protein.
 
     0.442
Tter_1773
KEGG: bha:BH1004 hypothetical protein.
  
     0.441
Your Current Organism:
Thermobaculum terrenum
NCBI taxonomy Id: 525904
Other names: T. terrenum ATCC BAA-798, Thermobaculum terrenum ATCC BAA-798, Thermobaculum terrenum YNP1, Thermobaculum terrenum str. ATCC BAA-798, Thermobaculum terrenum strain ATCC BAA-798
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